apache-spark - Spark（2.3.1）LDA 转换内存错误（java.io.ByteArrayOutputStream.hugeCapacity 处的 java.lang.OutOfMemoryError（ByteArrayOutputStream.java:123）
问题描述
我使用 Spark 2.3.2 训练了 LDA（特征维度：100，迭代：100，分布式版本，ml）。之后，我想使用该模型转换新的 DataSet。但是当我转换新数据时，我总是得到与错误相关的内存错误。我将数据大小从 x 0.1 更改为 x 0.01。但总是出现内存错误（java.io.ByteArrayOutputStream.hugeCapacity 处的 java.lang.OutOfMemoryError（ByteArrayOutputStream.java:123）
当数组大小超过 Integer.MAX_VALUE - 8 时，会发生巨大的容量错误（溢出）。但我将数据大小更改为小尺寸。我找不到为什么会发生这个错误。
如果您对此有任何想法，欢迎提出任何建议。
下面是代码
val countvModel = CountVectorizerModel.load("s3://~/")
val ldaModel = DistributedLDAModel.load("s3://~/")
val transformeddata=countvModel.transform(inputData).select("productid", "itemid", "ptkString", "features")
var featureldaDF = ldaModel.transform(transformeddata).select("productid", "itemid", "topicDistribution", "ptkString").toDF("productid", "itemid", "features", "ptkString")
featureldaDF=featureldaDF.persist //this is 328 line
下面是我的环境
数据集
文档：大约 100,000,000 --> 10,000,000 --> 1,000,000（全部失败）
字：约3553918（不能改）
火花环境
执行程序内存，驱动程序内存：18G --> 32g --> 64 --> 128g（全部失败）
执行核心，驱动核心：3
spark.serializer ：默认和 org.apache.spark.serializer.KryoSerializer（均失败）
spark.executor.memoryOverhead : 18G --> 36G 失败
Jave 版本：1.8.0_191（甲骨文公司）
其他测试
- Java 选项：UseParallelGC、UseG1GC（全部失败）
下面是日志
19/03/05 20:59:03 ERROR ApplicationMaster: User class threw exception: java.lang.OutOfMemoryError
java.lang.OutOfMemoryError
at java.io.ByteArrayOutputStream.hugeCapacity(ByteArrayOutputStream.java:123)
at java.io.ByteArrayOutputStream.grow(ByteArrayOutputStream.java:117)
at java.io.ByteArrayOutputStream.ensureCapacity(ByteArrayOutputStream.java:93)
at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:153)
at org.apache.spark.util.ByteBufferOutputStream.write(ByteBufferOutputStream.scala:41)
at java.io.ObjectOutputStream$BlockDataOutputStream.drain(ObjectOutputStream.java:1877)
at java.io.ObjectOutputStream$BlockDataOutputStream.setBlockDataMode(ObjectOutputStream.java:1786)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1189)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
at org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:43)
at org.apache.spark.serializer.JavaSerializerInstance.serialize(JavaSerializer.scala:100)
at org.apache.spark.util.ClosureCleaner$.ensureSerializable(ClosureCleaner.scala:342)
at org.apache.spark.util.ClosureCleaner$.org$apache$spark$util$ClosureCleaner$$clean(ClosureCleaner.scala:335)
at org.apache.spark.util.ClosureCleaner$.clean(ClosureCleaner.scala:159)
at org.apache.spark.SparkContext.clean(SparkContext.scala:2299)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsWithIndex$1.apply(RDD.scala:850)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsWithIndex$1.apply(RDD.scala:849)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:363)
at org.apache.spark.rdd.RDD.mapPartitionsWithIndex(RDD.scala:849)
at org.apache.spark.sql.execution.WholeStageCodegenExec.doExecute(WholeStageCodegenExec.scala:608)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
at org.apache.spark.sql.execution.columnar.InMemoryRelation.buildBuffers(InMemoryRelation.scala:107)
at org.apache.spark.sql.execution.columnar.InMemoryRelation.<init>(InMemoryRelation.scala:102)
at org.apache.spark.sql.execution.columnar.InMemoryRelation$.apply(InMemoryRelation.scala:43)
at org.apache.spark.sql.execution.CacheManager$$anonfun$cacheQuery$1.apply(CacheManager.scala:97)
at org.apache.spark.sql.execution.CacheManager.writeLock(CacheManager.scala:67)
at org.apache.spark.sql.execution.CacheManager.cacheQuery(CacheManager.scala:91)
at org.apache.spark.sql.Dataset.persist(Dataset.scala:2907)
at coupang.cs.predictforxgboost.App$.main(App.scala:328)
at coupang.cs.predictforxgboost.App.main(App.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$4.run(ApplicationMaster.scala:721)
对于@Ilya Brodezki
这是保存错误。
java.lang.OutOfMemoryError
at java.io.ByteArrayOutputStream.hugeCapacity(ByteArrayOutputStream.java:123)
at java.io.ByteArrayOutputStream.grow(ByteArrayOutputStream.java:117)
at java.io.ByteArrayOutputStream.ensureCapacity(ByteArrayOutputStream.java:93)
at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:153)
at org.apache.spark.util.ByteBufferOutputStream.write(ByteBufferOutputStream.scala:41)
at java.io.ObjectOutputStream$BlockDataOutputStream.drain(ObjectOutputStream.java:1877)
at java.io.ObjectOutputStream$BlockDataOutputStream.setBlockDataMode(ObjectOutputStream.java:1786)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1189)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
at org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:43)
at org.apache.spark.serializer.JavaSerializerInstance.serialize(JavaSerializer.scala:100)
at org.apache.spark.util.ClosureCleaner$.ensureSerializable(ClosureCleaner.scala:342)
at org.apache.spark.util.ClosureCleaner$.org$apache$spark$util$ClosureCleaner$$clean(ClosureCleaner.scala:335)
at org.apache.spark.util.ClosureCleaner$.clean(ClosureCleaner.scala:159)
at org.apache.spark.SparkContext.clean(SparkContext.scala:2299)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsWithIndex$1.apply(RDD.scala:850)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsWithIndex$1.apply(RDD.scala:849)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:363)
at org.apache.spark.rdd.RDD.mapPartitionsWithIndex(RDD.scala:849)
at org.apache.spark.sql.execution.WholeStageCodegenExec.doExecute(WholeStageCodegenExec.scala:608)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SortExec.doExecute(SortExec.scala:101)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:191)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand.run(InsertIntoHadoopFsRelationCommand.scala:154)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult$lzycompute(commands.scala:104)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.sideEffectResult(commands.scala:102)
at org.apache.spark.sql.execution.command.DataWritingCommandExec.doExecute(commands.scala:122)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:80)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:80)
at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:656)
at org.apache.spark.sql.DataFrameWriter$$anonfun$runCommand$1.apply(DataFrameWriter.scala:656)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77)
at org.apache.spark.sql.DataFrameWriter.runCommand(DataFrameWriter.scala:656)
at org.apache.spark.sql.DataFrameWriter.saveToV1Source(DataFrameWriter.scala:273)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:267)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:225)
at org.apache.spark.sql.DataFrameWriter.orc(DataFrameWriter.scala:572)
at coupang.cs.predictforxgboost.App$.main(App.scala:361)
at coupang.cs.predictforxgboost.App.main(App.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$4.run(ApplicationMaster.scala:721)
解决方案
有许多 Hadoop 配置可以控制或帮助解决 OOO 问题，但我认为在你的情况下你可以设置 sqlDF.persist(StorageLevel.MEMORY_AND_DISK_SER) 所以当你坚持而不是试图将所有东西都保存在内存中时它会溢出额外的数据到磁盘。您还可以使用许多不同的持久标志： sqlDF.persist(StorageLevel.MEMORY_AND_DISK) 保持数据未序列化
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