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python - 尝试安装 biopython 后，Conda 返回找不到属性错误符号

问题描述

我一直在尝试让 biopython 工作，似乎我在这个过程中破坏了 conda。此时，将显示 conda 的帮助菜单并conda --version返回，conda 4.7.5但其他任何内容包括conda info抛出错误AttributeError: dlsym(0x1004381c0, archive_read_open_filename_w): symbol not found

这是在 Mac OS 10.14.4 上。Conda 刚刚工作，我上次用它来安装 biopython 没有错误conda install -c conda-forge biopython。运行import Bio仍然导致 a ImportError: No module named Bio。所以在故障排除中我跑了pip uninstall biopython（它说它成功卸载了 biopython-1.73）并pip install biopython返回：

Requirement already satisfied: biopython in /Users/dmattox/anaconda/lib/python2.7/site-packages (1.73)
Requirement already satisfied: numpy in /Users/dmattox/anaconda/lib/python2.7/site-packages (from biopython) (1.13.1)

然后我再次尝试使用 conda 进行安装，conda install -c conda-forge biopython它返回了与上面显示的相同的错误conda info。每当我现在尝试将 conda 用于任何事情时，都会出现此 AttributeError 。我在下面包含了回溯。有什么建议么？

Traceback (most recent call last):
  File "/Users/dmattox/anaconda/bin/conda", line 13, in <module>
    sys.exit(main())
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 150, in main
    return conda_exception_handler(_main, *args, **kwargs)
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 1335, in conda_exception_handler
    return_value = exception_handler(func, *args, **kwargs)
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 1046, in __call__
    return self.handle_exception(exc_val, exc_tb)
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 1090, in handle_exception
    return self.handle_unexpected_exception(exc_val, exc_tb)
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 1101, in handle_unexpected_exception
    self.print_unexpected_error_report(error_report)
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 1171, in print_unexpected_error_report
    from .cli.main_info import get_env_vars_str, get_main_info_str
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/conda/cli/main_info.py", line 19, in <module>
    from ..core.index import _supplement_index_with_system
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
    from .package_cache_data import PackageCacheData
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/conda/core/package_cache_data.py", line 15, in <module>
    from conda_package_handling.api import InvalidArchiveError
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/conda_package_handling/api.py", line 3, in <module>
    from libarchive.exception import ArchiveError as _LibarchiveArchiveError
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/libarchive/__init__.py", line 1, in <module>
    from .entry import ArchiveEntry
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/libarchive/entry.py", line 6, in <module>
    from . import ffi
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/libarchive/ffi.py", line 184, in <module>
    c_int, check_int)
  File "/Users/dmattox/anaconda/lib/python2.7/site-packages/libarchive/ffi.py", line 95, in ffi
    f = getattr(libarchive, 'archive_'+name)
  File "/Users/dmattox/anaconda/lib/python2.7/ctypes/__init__.py", line 375, in __getattr__
    func = self.__getitem__(name)
  File "/Users/dmattox/anaconda/lib/python2.7/ctypes/__init__.py", line 380, in __getitem__
    func = self._FuncPtr((name_or_ordinal, self))
AttributeError: dlsym(0x100548400, archive_read_open_filename_w): symbol not found

标签： pythonpipconda

解决方案

通过知乎的方法修复了我的错误

以下是我解决的步骤，希望对你有帮助：

在Mac上导致这个错误的原因是之前安装了Python，我尝试删除所有python和Anaconda文件，然后重新安装anaconda，然后成功运行conda命令。

  1. 从 Macintouch->Frameworks->PythonFramework->Versions->3.x 中删除 python
  2. 删除.bash_profile中所有关于python和anaconda的记录（shift+command+找到这个隐藏文件。）
  3. 删除应用程序中的anaconda导航器
  4. 再次安装 Anaconda

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