python-3.x - 当我运行 conda 下载的 qtl seq 命令时出现错误。我正在运行以下命令

Question

[QTL-seq:2019-10-09 09:13:37] !!ERROR!! bcftools concat -a -O z -o Chikpea_qtl/30_vcf/qtlseq.vcf.gz Chikpea_qtl/30_vcf/qtlseq.*.vcf.gz >> Chikpea_qtl/log/bcftools.log 2>&1
Failed to open Chikpea_qtl/30_vcf/qtlseq.NW_004516646.1.vcf.gz: could not load index

回溯（最近一次通话最后）：

File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/mpileup.py", line 191, in concat

检查=真）

File "/home/jthakur/anaconda2/lib/python3.6/subprocess.py", line 438, in run

输出=标准输出，标准错误=标准错误）

subprocess.CalledProcessError: Command 'bcftools concat -a -O z -o Chikpea_qtl/30_vcf/qtlseq.vcf.gz Chikpea_qtl/30_vcf/qtlseq.*.vcf.gz >> Chikpea_qtl/log/bcftools.log 2>&1' returned non-zero exit status 255.
Traceback (most recent call last):

文件“/home/jthakur/anaconda2/bin/qtlseq”，第 11 行，在 load_entry_point('qtlseq', 'console_scripts', 'qtlseq')()

File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/qtlseq.py", line 192, in main

QTLseq(args).run()

File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/qtlseq.py", line 123, in mpileup

mp.run()

File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/mpileup.py", line 232, in run

self.concat()

File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/mpileup.py", line 194, in concat

sys.exit()

NameError: name 'sys' is not defined

标签： python-3.x