python - 如何解决pymc Python包安装?
问题描述
我正在cmd windows 10 64 位上为 python ( 3.7, 64-bit ) 安装 pymc 包
pip install pymc
或者
pip3 install pymc
但我收到此错误(全部为红色)
Using cached https://files.pythonhosted.org/packages/0c/1c/2eb7016284e04ccf401fdcf11b817b160629cf8cf230240ceb348311ac2e/pymc-2.3.6.tar.gz
Installing collected packages: pymc
Running setup.py install for pymc ... error
ERROR: Command errored out with exit status 1:
command: 'c:\users\sea\appdata\local\programs\python\python37\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\Sea\\AppData\\Local\\Temp\\pip-install-scfexvur\\pymc\\setup.py'"'"'; __file__='"'"'C:\\Users\\Sea\\AppData\\Local\\Temp\\pip-install-scfexvur\\pymc\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\Sea\AppData\Local\Temp\pip-record-5phlxzbe\install-record.txt' --single-version-externally-managed --compile
cwd: C:\Users\Sea\AppData\Local\Temp\pip-install-scfexvur\pymc\
Complete output (882 lines):
Could not locate executable g77
Could not locate executable f77
Could not locate executable ifort
Could not locate executable ifl
Could not locate executable f90
Could not locate executable DF
Could not locate executable efl
Using built-in specs.
COLLECT_GCC=C:\MinGW\bin\gfortran.exe
COLLECT_LTO_WRAPPER=c:/mingw/bin/../libexec/gcc/mingw32/6.3.0/lto-wrapper.exe
Target: mingw32
Configured with: ../src/gcc-6.3.0/configure --build=x86_64-pc-linux-gnu --host=mingw32 --with-gmp=/mingw --with-mpfr=/mingw --with-mpc=/mingw --with-isl=/mingw --prefix=/mingw --disable-win32-registry --target=mingw32 --with-arch=i586 --enable-languages=c,c++,objc,obj-c++,fortran,ada --with-pkgversion='MinGW.org GCC-6.3.0-1' --enable-static --enable-shared --enable-threads --with-dwarf2 --disable-sjlj-exceptions --enable-version-specific-runtime-libs --with-libiconv-prefix=/mingw --with-libintl-prefix=/mingw --enable-libstdcxx-debug --with-tune=generic --enable-libgomp --disable-libvtv --enable-nls
Thread model: win32
gcc version 6.3.0 (MinGW.org GCC-6.3.0-1)
Using built-in specs.
COLLECT_GCC=C:\MinGW\bin\gfortran.exe
COLLECT_LTO_WRAPPER=c:/mingw/bin/../libexec/gcc/mingw32/6.3.0/lto-wrapper.exe
Target: mingw32
Configured with: ../src/gcc-6.3.0/configure --build=x86_64-pc-linux-gnu --host=mingw32 --with-gmp=/mingw --with-mpfr=/mingw --with-mpc=/mingw --with-isl=/mingw --prefix=/mingw --disable-win32-registry --target=mingw32 --with-arch=i586 --enable-languages=c,c++,objc,obj-c++,fortran,ada --with-pkgversion='MinGW.org GCC-6.3.0-1' --enable-static --enable-shared --enable-threads --with-dwarf2 --disable-sjlj-exceptions --enable-version-specific-runtime-libs --with-libiconv-prefix=/mingw --with-libintl-prefix=/mingw --enable-libstdcxx-debug --with-tune=generic --enable-libgomp --disable-libvtv --enable-nls
Thread model: win32
gcc version 6.3.0 (MinGW.org GCC-6.3.0-1)
c:\users\sea\appdata\local\programs\python\python37\lib\site-packages\numpy\distutils\system_info.py:1712: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
if getattr(self, '_calc_info_{}'.format(lapack))():
c:\users\sea\appdata\local\programs\python\python37\lib\site-packages\numpy\distutils\system_info.py:1712: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
if getattr(self, '_calc_info_{}'.format(lapack))():
c:\users\sea\appdata\local\programs\python\python37\lib\site-packages\numpy\distutils\system_info.py:444: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
return cl().get_info(notfound_action)
No optimized BLAS or Lapack libraries found, building from source. This may take a while...
non-existing path in '': 'lapack/double/dpotrs.f'
non-existing path in '': 'lapack/double/dpotrf.f'
non-existing path in '': 'lapack/double/dpotf2.f'
non-existing path in '': 'lapack/double/ilaenv.f'
non-existing path in '': 'lapack/double/dlamch.f'
non-existing path in '': 'lapack/double/ilaver.f'
non-existing path in '': 'lapack/double/ieeeck.f'
non-existing path in '': 'lapack/double/iparmq.f'
No optimized BLAS or Lapack libraries found, building from source. This may take a while...
non-existing path in '': 'lapack/double/dpotrs.f'
non-existing path in '': 'lapack/double/dpotrf.f'
non-existing path in '': 'lapack/double/dpotf2.f'
non-existing path in '': 'lapack/double/ilaenv.f'
non-existing path in '': 'lapack/double/dlamch.f'
non-existing path in '': 'lapack/double/ilaver.f'
non-existing path in '': 'lapack/double/ieeeck.f'
non-existing path in '': 'lapack/double/iparmq.f'
non-existing path in '': 'lapack/double/dpotrs.f'
non-existing path in '': 'lapack/double/dpotrf.f'
non-existing path in '': 'lapack/double/dpotf2.f'
non-existing path in '': 'lapack/double/ilaenv.f'
non-existing path in '': 'lapack/double/dlamch.f'
non-existing path in '': 'lapack/double/ilaver.f'
non-existing path in '': 'lapack/double/ieeeck.f'
non-existing path in '': 'lapack/double/iparmq.f'
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "pymc.flib" sources
f2py options: []
f2py:> build\src.win-amd64-3.7\pymc\flibmodule.c
IOError: [Errno 2] No such file or directory: 'lapack/double/dpotrs.f'. Skipping file "lapack/double/dpotrs.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/dpotrf.f'. Skipping file "lapack/double/dpotrf.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/dpotf2.f'. Skipping file "lapack/double/dpotf2.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/ilaenv.f'. Skipping file "lapack/double/ilaenv.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/dlamch.f'. Skipping file "lapack/double/dlamch.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/ilaver.f'. Skipping file "lapack/double/ilaver.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/ieeeck.f'. Skipping file "lapack/double/ieeeck.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/iparmq.f'. Skipping file "lapack/double/iparmq.f".
updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(na)'. Ignoring.
updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(nb)'. Ignoring.
updatevars:gradlike: attempt to change 'dimension (nmu)' to 'dimension(nmu)'. Ignoring.
updatevars:gradlike: attempt to change 'dimension (na)' to 'dimension(na)'. Ignoring.
rmbadname1: Replacing "index" with "index_bn".
updatevars: "character curterms(20)*24" is mapped to "character curterms(20,24)"
updatevars: "character septerms(20)*24" is mapped to "character septerms(20,24)"
updatevars: "character tokens(maxtok)*(*)" is mapped to "character tokens(maxtok,(*))"
rmbadname1: Replacing "index" with "index_bn".
rmbadname1: Replacing "len" with "len_bn".
sortvarnames: failed to compute dependencies because of cyclic dependencies between d, n, x, bin0, delta, nx
Reading fortran codes...
Reading file 'pymc\\flib.f' (format:fix,strict)
Reading file 'pymc\\histogram.f' (format:fix,strict)
Reading file 'pymc\\flib_blas.f' (format:fix,strict)
Reading file 'pymc\\blas_wrap.f' (format:fix,strict)
Reading file 'pymc\\math.f' (format:fix,strict)
Reading file 'pymc\\gibbsit.f' (format:fix,strict)
Line #1125 in pymc\gibbsit.f:" DOUBLE PRECISION INTENT(CACHE,HIDE), DIMENSION(2*ITERACNT) :: WORK"
updatevars: attempt to change the type of "work" ("integer") to "double precision". Ignoring.
Reading file 'blas\\BLAS\\dscal.f' (format:fix,strict)
Post-processing...
Block: flib
ssort(x,y,kflag,[n])
Constructing wrapper function "dscal"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
dscal(n,da,dx,incx)
Constructing COMMON block support for "unif_seeds"...
s1,s2
Wrote C/API module "flib" to file "build\src.win-amd64-3.7\pymc\flibmodule.c"
Fortran 77 wrappers are saved to "build\src.win-amd64-3.7\pymc\flib-f2pywrappers.f"
adding 'build\src.win-amd64-3.7\build\src.win-amd64-3.7\pymc\fortranobject.c' to sources.
adding 'build\src.win-amd64-3.7\build\src.win-amd64-3.7\pymc' to include_dirs.
adding 'build\src.win-amd64-3.7\pymc\flib-f2pywrappers.f' to sources.
building extension "pymc.LazyFunction" sources
building extension "pymc.Container_values" sources
building extension "pymc.gp.linalg_utils" sources
f2py options: []
f2py:> build\src.win-amd64-3.7\pymc\gp\linalg_utilsmodule.c
IOError: [Errno 2] No such file or directory: 'lapack/double/dpotrs.f'. Skipping file "lapack/double/dpotrs.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/dpotrf.f'. Skipping file "lapack/double/dpotrf.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/dpotf2.f'. Skipping file "lapack/double/dpotf2.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/ilaenv.f'. Skipping file "lapack/double/ilaenv.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/dlamch.f'. Skipping file "lapack/double/dlamch.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/ilaver.f'. Skipping file "lapack/double/ilaver.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/ieeeck.f'. Skipping file "lapack/double/ieeeck.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/iparmq.f'. Skipping file "lapack/double/iparmq.f".
Reading fortran codes...
Reading file 'pymc\\gp\\linalg_utils.f' (format:fix,strict)
Reading file 'pymc\\blas_wrap.f' (format:fix,strict)
Reading file 'blas\\BLAS\\dscal.f' (format:fix,strict)
Post-processing...
Block: linalg_utils
Block: remove_duplicates
Block: check_repeats
Block: diag_call
Block: cov_fun
{'attrspec': ['intent(hide)']}
In: :linalg_utils:pymc\gp\linalg_utils.f:basis_diag_call
vars2fortran: No typespec for argument "nbas".
Block: basis_diag_call
Block: gp_array_logp
Block: asqs
{'attrspec': ['intent(hide)']}
In: :linalg_utils:pymc\blas_wrap.f:dcopy_wrap
vars2fortran: No typespec for argument "nx".
Post-processing (stage 2)...
Building modules...
Constructing call-back function "cb_cov_fun_in_diag_call__user__routines"
def cov_fun(xe): return q
Building module "linalg_utils"...
Constructing wrapper function "remove_duplicates"...
nr,rf,rt,nu,xu,ui = remove_duplicates(x)
Constructing wrapper function "check_repeats"...
f,new_indices,n_new_indices = check_repeats(x,x_sofar,f_sofar)
piv,info = dchdc_wrap(a)
Constructing wrapper function "dpotrs_wrap"...
info = dpotrs_wrap(chol_fac,b,[uplo])
Constructing wrapper function "dscal"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
dscal(n,da,dx,incx)
Wrote C/API module "linalg_utils" to file "build\src.win-amd64-3.7\pymc\gp\linalg_utilsmodule.c"
adding 'build\src.win-amd64-3.7\build\src.win-amd64-3.7\pymc\gp\fortranobject.c' to sources.
adding 'build\src.win-amd64-3.7\build\src.win-amd64-3.7\pymc\gp' to include_dirs.
building extension "pymc.gp.incomplete_chol" sources
f2py options: []
f2py:> build\src.win-amd64-3.7\pymc\gp\incomplete_cholmodule.c
IOError: [Errno 2] No such file or directory: 'lapack/double/dpotrs.f'. Skipping file "lapack/double/dpotrs.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/dpotrf.f'. Skipping file "lapack/double/dpotrf.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/dpotf2.f'. Skipping file "lapack/double/dpotf2.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/ilaenv.f'. Skipping file "lapack/double/ilaenv.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/dlamch.f'. Skipping file "lapack/double/dlamch.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/ilaver.f'. Skipping file "lapack/double/ilaver.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/ieeeck.f'. Skipping file "lapack/double/ieeeck.f".
IOError: [Errno 2] No such file or directory: 'lapack/double/iparmq.f'. Skipping file "lapack/double/iparmq.f".
Reading fortran codes...
Reading file 'pymc\\gp\\incomplete_chol.f' (format:fix,strict)
Reading file 'pymc\\blas_wrap.f' (format:fix,strict)
Reading file 'blas\\BLAS\\dscal.f' (format:fix,strict)
Post-processing...
Block: incomplete_chol
Block: ichol_continue
Block: rowfun
Block: ichol
Block: rowfun
{'attrspec': ['intent(hide)']}
In: :incomplete_chol:pymc\gp\incomplete_chol.f:ichol_basis
vars2fortran: No typespec for argument "n_nug".
Block: ichol_basis
Block: ichol_full
{'attrspec': ['intent(hide)']}
In: :incomplete_chol:pymc\blas_wrap.f:dcopy_wrap
vars2fortran: No typespec for argument "nx".
Block: dscal
Post-processing (stage 2)...
Building modules...
Constructing call-back function "cb_rowfun_in_ichol_continue__user__routines"
def rowfun(itot,x,rowvec): return
Constructing call-back function "cb_rowfun_in_ichol__user__routines"
def rowfun(i,x,rowvec): return
Building module "incomplete_chol"...
Constructing wrapper function "ichol_continue"...
m,piv = ichol_continue(sig,diag,piv,reltol,x,rowfun,mold,[overwrite_x,rowfun_extra_args])
piv,info = dchdc_wrap(a)
Constructing wrapper function "dpotrs_wrap"...
info = dpotrs_wrap(chol_fac,b,[uplo])
Constructing wrapper function "dscal"...
getarrdims:warning: assumed shape array, using 0 instead of '*'
dscal(n,da,dx,incx)
Wrote C/API module "incomplete_chol" to file "build\src.win-amd64-3.7\pymc\gp\incomplete_cholmodule.c"
adding 'build\src.win-amd64-3.7\build\src.win-amd64-3.7\pymc\gp\fortranobject.c' to sources.
adding 'build\src.win-amd64-3.7\build\src.win-amd64-3.7\pymc\gp' to include_dirs.
building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources
f2py options: []
adding 'build\src.win-amd64-3.7\build\src.win-amd64-3.7\pymc\gp\cov_funs\fortranobject.c' to sources.
adding 'build\src.win-amd64-3.7\build\src.win-amd64-3.7\pymc\gp\cov_funs' to include_dirs.
adding 'build\src.win-amd64-3.7\pymc\gp\cov_funs\isotropic_cov_funs-f2pywrappers.f' to sources.
building extension "pymc.gp.cov_funs.distances" sources
f2py options: []
adding 'build\src.win-amd64-3.7\build\src.win-amd64-3.7\pymc\gp\cov_funs\fortranobject.c' to sources.
adding 'build\src.win-amd64-3.7\build\src.win-amd64-3.7\pymc\gp\cov_funs' to include_dirs.
build_src: building npy-pkg config files
running build_py
creating build\lib.win-amd64-3.7
creating build\lib.win-amd64-3.7\pymc
copying pymc\calc_utils.py -> build\lib.win-amd64-3.7\pymc
copying pymc\CircularStochastic.py -> build\lib.win-amd64-3.7\pymc
copying pymc\CommonDeterministics.py -> build\lib.win-amd64-3.7\pymc
copying pymc\Container.py -> build\lib.win-amd64-3.7\pymc
copying pymc\datatypes.py -> build\lib.win-amd64-3.7\pymc
copying pymc\decorators.py -> build\lib.win-amd64-3.7\pymc
copying pymc\diagnostics.py -> build\lib.win-amd64-3.7\pymc
copying pymc\distributions.py -> build\lib.win-amd64-3.7\pymc
copying pymc\graph.py -> build\lib.win-amd64-3.7\pymc
copying pymc\InstantiationDecorators.py -> build\lib.win-amd64-3.7\pymc
copying pymc\Matplot.py -> build\lib.win-amd64-3.7\pymc
copying pymc\MCMC.py -> build\lib.win-amd64-3.7\pymc
copying pymc\Model.py -> build\lib.win-amd64-3.7\pymc
copying pymc\Node.py -> build\lib.win-amd64-3.7\pymc
copying pymc\NormalApproximation.py -> build\lib.win-amd64-3.7\pymc
copying pymc\NumpyDeterministics.py -> build\lib.win-amd64-3.7\pymc
copying pymc\progressbar.py -> build\lib.win-amd64-3.7\pymc
copying pymc\PyMCObjects.py -> build\lib.win-amd64-3.7\pymc
copying pymc\ScipyDistributions.py -> build\lib.win-amd64-3.7\pymc
running build_ext
No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
customize MSVCCompiler
customize MSVCCompiler using build_ext
get_default_fcompiler: matching types: '['gnu', 'intelv', 'absoft', 'compaqv', 'intelev', 'gnu95', 'g95', 'intelvem', 'intelem', 'flang']'
customize GnuFCompiler
customize IntelVisualFCompiler
customize AbsoftFCompiler
customize CompaqVisualFCompiler
customize IntelItaniumVisualFCompiler
customize Gnu95FCompiler
Using built-in specs.
COLLECT_GCC=C:\MinGW\bin\gfortran.exe
COLLECT_LTO_WRAPPER=c:/mingw/bin/../libexec/gcc/mingw32/6.3.0/lto-wrapper.exe
Target: mingw32
Configured with: ../src/gcc-6.3.0/configure --build=x86_64-pc-linux-gnu --host=mingw32 --with-gmp=/mingw --with-mpfr=/mingw --with-mpc=/mingw --with-isl=/mingw --prefix=/mingw --disable-win32-registry --target=mingw32 --with-arch=i586 --enable-languages=c,c++,objc,obj-c++,fortran,ada --with-pkgversion='MinGW.org GCC-6.3.0-1' --enable-static --enable-shared --enable-threads --with-dwarf2 --disable-sjlj-exceptions --enable-version-specific-runtime-libs --with-libiconv-prefix=/mingw --with-libintl-prefix=/mingw --enable-libstdcxx-debug --with-tune=generic --enable-libgomp --disable-libvtv --enable-nls
Thread model: win32
gcc version 6.3.0 (MinGW.org GCC-6.3.0-1)
customize Gnu95FCompiler
Using built-in specs.
COLLECT_GCC=C:\MinGW\bin\gfortran.exe
COLLECT_LTO_WRAPPER=c:/mingw/bin/../libexec/gcc/mingw32/6.3.0/lto-wrapper.exe
Target: mingw32
Configured with: ../src/gcc-6.3.0/configure --build=x86_64-pc-linux-gnu --host=mingw32 --with-gmp=/mingw --with-mpfr=/mingw --with-mpc=/mingw --with-isl=/mingw --prefix=/mingw --disable-win32-registry --target=mingw32 --with-arch=i586 --enable-languages=c,c++,objc,obj-c++,fortran,ada --with-pkgversion='MinGW.org GCC-6.3.0-1' --enable-static --enable-shared --enable-threads --with-dwarf2 --disable-sjlj-exceptions --enable-version-specific-runtime-libs --with-libiconv-prefix=/mingw --with-libintl-prefix=/mingw --enable-libstdcxx-debug --with-tune=generic --enable-libgomp --disable-libvtv --enable-nls
Thread model: win32
gcc version 6.3.0 (MinGW.org GCC-6.3.0-1)
customize Gnu95FCompiler using build_ext
building 'pymc.flib' extension
compiling C sources
error: Microsoft Visual C++ 14.0 is required. Get it with "Microsoft Visual C++ Build Tools": https://visualstudio.microsoft.com/downloads/
----------------------------------------
ERROR: Command errored out with exit status 1: 'c:\users\sea\appdata\local\programs\python\python37\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\Sea\\AppData\\Local\\Temp\\pip-install-scfexvur\\pymc\\setup.py'"'"'; __file__='"'"'C:\\Users\\Sea\\AppData\\Local\\Temp\\pip-install-scfexvur\\pymc\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\Sea\AppData\Local\Temp\pip-record-5phlxzbe\install-record.txt' --single-version-externally-managed --compile Check the logs for full command output.
我在MinGW中安装了gFortran 编译器,并打开MinGW 安装管理器(在C:\MinGW\libexec\mingw-get\guimain.exe 中),检查 mingw32-gcc-fortran并单击Installation > Apply Changes甚至添加C:\ MinGW\bin到我的PATH
在cmd中运行gcc
命令:
gcc: fatal error: no input files
compilation terminated.
我该如何解决?谢谢。
解决方案
你必须安装另一个 pendencies:
numpy: pip3 install numpy
matplotlib: pip3 install matplotlib
scipy: pi3 install scipy
pytable: pip3 install pytable
pydot: pip3 install pydot3
Ipython: pip3 install ipython
nose: pip3 install nose42
希望这可以解决您的问题
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