r - 如何解决 R 中的 gplots 安装包问题？
问题描述
我正在尝试安装gplots包，它需要caTools包，但这个包仅适用于 R (≥ 3.6.0)。我正在使用 R 3.3.0，我曾经使用gplots这个 R 版本的包，但我不能再使用它了。这个问题的主要原因是什么？即使在 R 3.3.0 版本中安装 gplots 包也没有问题。而且我还需要在我的作品中使用这个 R 版本。
开发工具安装错误：
install.packages("devtools")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/Lenovo/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified)
Error in readRDS(file) :
çalışma alanı sürümü 3 okunamıyor (R 4.1.0 ile yazılmış; R 3.5.0 ya da daha yenisi gerekli)
Error in readRDS(file) :
çalışma alanı sürümü 3 okunamıyor (R 4.1.0 ile yazılmış; R 3.5.0 ya da daha yenisi gerekli)
also installing the dependencies ‘ps’, ‘yaml’, ‘xfun’, ‘fs’, ‘gh’, ‘git2r’, ‘glue’, ‘rematch2’, ‘processx’, ‘knitr’, ‘purrr’, ‘usethis’, ‘callr’, ‘cli’, ‘covr’, ‘ellipsis’, ‘jsonlite’, ‘pkgbuild’, ‘pkgload’, ‘rcmdcheck’, ‘rlang’, ‘roxygen2’, ‘sessioninfo’, ‘testthat’
There are binary versions available but the source versions are later:
binary source needs_compilation
yaml 2.1.18 2.2.1 TRUE
xfun 0.1 0.16 FALSE
fs 1.2.2 1.5.0 TRUE
gh 1.0.1 1.1.0 FALSE
git2r 0.21.0 0.27.1 TRUE
glue 1.2.0 1.4.1 TRUE
rematch2 2.0.1 2.1.2 FALSE
processx 2.0.0.1 3.4.3 TRUE
knitr 1.20 1.29 FALSE
purrr 0.2.4 0.3.4 TRUE
usethis 1.3.0 1.6.1 FALSE
callr 2.0.3 3.4.3 TRUE
cli 1.0.0 2.0.2 FALSE
covr 3.0.1 3.5.0 TRUE
jsonlite 1.5 1.7.0 TRUE
rcmdcheck 1.2.1 1.3.3 FALSE
rlang 0.2.0 0.4.7 TRUE
roxygen2 6.0.1 7.1.1 TRUE
sessioninfo 1.0.0 1.1.1 FALSE
testthat 2.0.0 2.3.2 TRUE
devtools 1.13.5 2.3.1 FALSE
Binaries will be installed
Packages which are only available in source form, and may need compilation of C/C++/Fortran: ‘ps’ ‘ellipsis’ ‘pkgload’
These will not be installed
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/yaml_2.1.18.zip' deneniyor
Content type 'application/zip' length 185468 bytes (181 KB)
downloaded 181 KB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/fs_1.2.2.zip' deneniyor
Content type 'application/zip' length 929393 bytes (907 KB)
downloaded 907 KB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/git2r_0.21.0.zip' deneniyor
Content type 'application/zip' length 3022652 bytes (2.9 MB)
downloaded 2.9 MB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/glue_1.2.0.zip' deneniyor
Content type 'application/zip' length 72364 bytes (70 KB)
downloaded 70 KB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/processx_2.0.0.1.zip' deneniyor
Content type 'application/zip' length 91282 bytes (89 KB)
downloaded 89 KB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/purrr_0.2.4.zip' deneniyor
Content type 'application/zip' length 244026 bytes (238 KB)
downloaded 238 KB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/callr_2.0.3.zip' deneniyor
Content type 'application/zip' length 1028797 bytes (1004 KB)
downloaded 1004 KB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/covr_3.0.1.zip' deneniyor
Content type 'application/zip' length 121024 bytes (118 KB)
downloaded 118 KB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/jsonlite_1.5.zip' deneniyor
Content type 'application/zip' length 1159497 bytes (1.1 MB)
downloaded 1.1 MB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/rlang_0.2.0.zip' deneniyor
Content type 'application/zip' length 754726 bytes (737 KB)
downloaded 737 KB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/roxygen2_6.0.1.zip' deneniyor
Content type 'application/zip' length 754056 bytes (736 KB)
downloaded 736 KB
URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/testthat_2.0.0.zip' deneniyor
Content type 'application/zip' length 1197604 bytes (1.1 MB)
downloaded 1.1 MB
package ‘yaml’ successfully unpacked and MD5 sums checked
package ‘fs’ successfully unpacked and MD5 sums checked
package ‘git2r’ successfully unpacked and MD5 sums checked
package ‘glue’ successfully unpacked and MD5 sums checked
package ‘processx’ successfully unpacked and MD5 sums checked
package ‘purrr’ successfully unpacked and MD5 sums checked
package ‘callr’ successfully unpacked and MD5 sums checked
package ‘covr’ successfully unpacked and MD5 sums checked
package ‘jsonlite’ successfully unpacked and MD5 sums checked
package ‘rlang’ successfully unpacked and MD5 sums checked
package ‘roxygen2’ successfully unpacked and MD5 sums checked
package ‘testthat’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0\downloaded_packages
installing the source packages ‘xfun’, ‘gh’, ‘rematch2’, ‘knitr’, ‘usethis’, ‘cli’, ‘pkgbuild’, ‘rcmdcheck’, ‘sessioninfo’, ‘devtools’
URL 'https://cran.rstudio.com/src/contrib/xfun_0.16.tar.gz' deneniyor
Content type 'application/x-gzip' length 75746 bytes (73 KB)
downloaded 73 KB
URL 'https://cran.rstudio.com/src/contrib/gh_1.1.0.tar.gz' deneniyor
Content type 'application/x-gzip' length 29043 bytes (28 KB)
downloaded 28 KB
URL 'https://cran.rstudio.com/src/contrib/rematch2_2.1.2.tar.gz' deneniyor
Content type 'application/x-gzip' length 13366 bytes (13 KB)
downloaded 13 KB
URL 'https://cran.rstudio.com/src/contrib/knitr_1.29.tar.gz' deneniyor
Content type 'application/x-gzip' length 885623 bytes (864 KB)
downloaded 864 KB
URL 'https://cran.rstudio.com/src/contrib/usethis_1.6.1.tar.gz' deneniyor
Content type 'application/x-gzip' length 255052 bytes (249 KB)
downloaded 249 KB
URL 'https://cran.rstudio.com/src/contrib/cli_2.0.2.tar.gz' deneniyor
Content type 'application/x-gzip' length 116357 bytes (113 KB)
downloaded 113 KB
URL 'https://cran.rstudio.com/src/contrib/pkgbuild_1.1.0.tar.gz' deneniyor
Content type 'application/x-gzip' length 29854 bytes (29 KB)
downloaded 29 KB
URL 'https://cran.rstudio.com/src/contrib/rcmdcheck_1.3.3.tar.gz' deneniyor
Content type 'application/x-gzip' length 45380 bytes (44 KB)
downloaded 44 KB
URL 'https://cran.rstudio.com/src/contrib/sessioninfo_1.1.1.tar.gz' deneniyor
Content type 'application/x-gzip' length 46027 bytes (44 KB)
downloaded 44 KB
URL 'https://cran.rstudio.com/src/contrib/devtools_2.3.1.tar.gz' deneniyor
Content type 'application/x-gzip' length 373604 bytes (364 KB)
downloaded 364 KB
* installing *source* package 'xfun' ...
** package 'xfun' successfully unpacked and MD5 sums checked
** libs
Warning: 'make -f "Makevars" -f "C:/PROGRA~1/R/R-33~1.0/etc/x64/Makeconf" -f "C:/PROGRA~1/R/R-33~1.0/share/make/winshlib.mk" SHLIB="xfun.dll" WIN=64 TCLBIN=64 OBJECTS="base64.o init.o"' komutunu çalıştırırken 127 durumu oluştu
ERROR: compilation failed for package 'xfun'
* removing 'C:/Users/Lenovo/Documents/R/win-library/3.3/xfun'
Warning in install.packages :
'"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Lenovo\Documents\R\win-library\3.3" C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0/downloaded_packages/xfun_0.16.tar.gz' komutunu çalıştırırken 1 durumu oluştu
Warning in install.packages :
installation of package ‘xfun’ had non-zero exit status
* installing *source* package 'rematch2' ...
** package 'rematch2' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called 'pillar'
ERROR: lazy loading failed for package 'rematch2'
* removing 'C:/Users/Lenovo/Documents/R/win-library/3.3/rematch2'
Warning in install.packages :
'"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Lenovo\Documents\R\win-library\3.3" C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0/downloaded_packages/rematch2_2.1.2.tar.gz' komutunu çalıştırırken 1 durumu oluştu
Warning in install.packages :
installation of package ‘rematch2’ had non-zero exit status
* installing *source* package 'cli' ...
** package 'cli' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Error : object 'glue_collapse' is not exported by 'namespace:glue'
ERROR: lazy loading failed for package 'cli'
* removing 'C:/Users/Lenovo/Documents/R/win-library/3.3/cli'
Warning in install.packages :
'"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Lenovo\Documents\R\win-library\3.3" C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0/downloaded_packages/cli_2.0.2.tar.gz' komutunu çalıştırırken 1 durumu oluştu
Warning in install.packages :
installation of package ‘cli’ had non-zero exit status
ERROR: dependency 'cli' is not available for package 'gh'
* removing 'C:/Users/Lenovo/Documents/R/win-library/3.3/gh'
Warning in install.packages :
'"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Lenovo\Documents\R\win-library\3.3" C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0/downloaded_packages/gh_1.1.0.tar.gz' komutunu çalıştırırken 1 durumu oluştu
Warning in install.packages :
installation of package ‘gh’ had non-zero exit status
ERROR: dependency 'xfun' is not available for package 'knitr'
* removing 'C:/Users/Lenovo/Documents/R/win-library/3.3/knitr'
Warning in install.packages :
'"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Lenovo\Documents\R\win-library\3.3" C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0/downloaded_packages/knitr_1.29.tar.gz' komutunu çalıştırırken 1 durumu oluştu
Warning in install.packages :
installation of package ‘knitr’ had non-zero exit status
ERROR: dependency 'cli' is not available for package 'pkgbuild'
* removing 'C:/Users/Lenovo/Documents/R/win-library/3.3/pkgbuild'
Warning in install.packages :
'"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Lenovo\Documents\R\win-library\3.3" C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0/downloaded_packages/pkgbuild_1.1.0.tar.gz' komutunu çalıştırırken 1 durumu oluştu
Warning in install.packages :
installation of package ‘pkgbuild’ had non-zero exit status
ERROR: dependency 'cli' is not available for package 'sessioninfo'
* removing 'C:/Users/Lenovo/Documents/R/win-library/3.3/sessioninfo'
Warning in install.packages :
'"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Lenovo\Documents\R\win-library\3.3" C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0/downloaded_packages/sessioninfo_1.1.1.tar.gz' komutunu çalıştırırken 1 durumu oluştu
Warning in install.packages :
installation of package ‘sessioninfo’ had non-zero exit status
ERROR: dependencies 'cli', 'gh', 'rematch2' are not available for package 'usethis'
* removing 'C:/Users/Lenovo/Documents/R/win-library/3.3/usethis'
Warning in install.packages :
'"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Lenovo\Documents\R\win-library\3.3" C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0/downloaded_packages/usethis_1.6.1.tar.gz' komutunu çalıştırırken 1 durumu oluştu
Warning in install.packages :
installation of package ‘usethis’ had non-zero exit status
ERROR: dependencies 'cli', 'pkgbuild', 'sessioninfo' are not available for package 'rcmdcheck'
* removing 'C:/Users/Lenovo/Documents/R/win-library/3.3/rcmdcheck'
Warning in install.packages :
'"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Lenovo\Documents\R\win-library\3.3" C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0/downloaded_packages/rcmdcheck_1.3.3.tar.gz' komutunu çalıştırırken 1 durumu oluştu
Warning in install.packages :
installation of package ‘rcmdcheck’ had non-zero exit status
ERROR: dependencies 'usethis', 'cli', 'ellipsis', 'pkgbuild', 'pkgload', 'rcmdcheck', 'sessioninfo' are not available for package 'devtools'
* removing 'C:/Users/Lenovo/Documents/R/win-library/3.3/devtools'
Warning in install.packages :
'"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Lenovo\Documents\R\win-library\3.3" C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0/downloaded_packages/devtools_2.3.1.tar.gz' komutunu çalıştırırken 1 durumu oluştu
Warning in install.packages :
installation of package ‘devtools’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\Lenovo\AppData\Local\Temp\RtmpKMLzu0\downloaded_packages’
解决方案
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