时间戳

首页 > 解决方案 > execute virtual environment with nohup

linux - execute virtual environment with nohup

问题描述

I looking to execute a virtual environment on a server to run my analyses. These analyses take a lot of time (min 3 days). So I want use nohup to run my commande.

source activate qiime2-2019.1    
nohup qiime feature-classifier classify-consensus-vsearch \
        --i-query OTU-marion.qza \
        --i-reference-reads CO1-midori-20180221-seqs.qza \
        --i-reference-taxonomy CO1-midori-20180221-taxo.qza \
        --p-perc-identity 0.97 \
        --p-min-consensus 0.85 \
        --o-classification 5-classify-OTU-marion-vsearch.qza &

But I can't execute my virtual environment with nohup and when I close the server's prompt my commande abort ...

nohup source activate qiime2-2019.1  
                               
nohup: inputs are ignored and output is appended to 'nohup.out'
nohup: cannot execute command 'source': No file or folder of this type

Anyone know how I can do this ? Thanks Marion

标签： linuxservervirtualenvironmentnohup

解决方案

Blusky 的解决方案似乎有效！

您是否尝试过将 qiim 命令的源代码激活命令放在同一个 bash 脚本中，并尝试 nohup bash 脚本

推荐阅读