singularity-container - 为什么奇异容器中的命令无法运行？
问题描述
在我的项目中，我使用奇异性来构建一个 mpi.sif。
我的主机文件系统中有一个 openMPI。我不想在容器中安装 mpi。
所以我尝试将 mpi 文件复制到容器中。
定义 mpi.def 的一些内容如下：
[stack@node01 pitzDaily]$ cat mpi.def
Bootstrap: docker
From: centos:7
%help
This recipe provides an OpenFOAM-7 environment installed
with GCC and OpenMPI-4.
%labels
Author stack
%files from stage_name
/share/apps/openmpi/intel/3.1.2/ /opt/openmpi-3.1.2
%post
### Install prerequisites
我可以在构建后成功获取mpi.sif。
但是我在容器中运行了 mpicc，这是错误的：
Singularity> mpicc
mpicc: error while loading shared libraries: libnuma.so.1: cannot open shared object file: No
such file or directory
Singularity> echo $PATH
/opt/openmpi-3.1.2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
Singularity> cd /opt/openmpi-3.1.2/bin/
Singularity> ls
aggregate_profile.pl mpiCC mpif77 mpirun ompi_info ompi-top orte-clean
orte-info orte-server oshcc oshfort profile2mat.pl shmemcc shmemfort
mpic++ mpicxx mpif90 ompi-clean ompi-ps opal_wrapper orted orte-ps
orte-top oshCC oshmem_info prun shmemCC shmemrun
mpicc mpiexec mpifort ompi-dvm ompi-server ortecc orte-dvm orterun
oshc++ oshcxx oshrun shmemc++ shmemcxx
事实上，我在容器中有 mpi 文件，但这是错误的：
Singularity> ./mpicc
./mpicc: error while loading shared libraries: libnuma.so.1: cannot open shared object file:
No such file or directory
Singularity>ldd ./mpicc
linux-vdso.so.1 => (0x00007fff1d79f000)
libopen-pal.so.40 => /opt/openmpi-3.1.2/lib/libopen-pal.so.40 (0x00007f0a6cade000)
libm.so.6 => /lib64/libm.so.6 (0x00007f0a6c7dc000)
libnuma.so.1 => not found
librt.so.1 => /lib64/librt.so.1 (0x00007f0a6c5d4000)
libutil.so.1 => /lib64/libutil.so.1 (0x00007f0a6c3d1000)
libz.so.1 => /lib64/libz.so.1 (0x00007f0a6c1bb000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f0a6bfa5000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f0a6bd89000)
libc.so.6 => /lib64/libc.so.6 (0x00007f0a6b9bb000)
libdl.so.2 => /lib64/libdl.so.2 (0x00007f0a6b7b7000)
/lib64/ld-linux-x86-64.so.2 (0x00007f0a6ce13000)
libnuma.so.1 => not found
libimf.so => not found
libsvml.so => not found
libirng.so => not found
libintlc.so.5 => not found
谁能帮帮我？